| 1. Round | 25/09/2003 | Girondins Bordeaux | - | FK Artmedia Petržalka | 2:1 |  |
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| 1. Round | 15/10/2003 | FK Artmedia Petržalka | - | Girondins Bordeaux | 1:1 | ||||
| 2. Round | 06/11/2003 | Girondins Bordeaux | - | Heart of Midlothian | 0:1 | ||||
| 2. Round | 27/11/2003 | Heart of Midlothian | - | Girondins Bordeaux | 0:2 | |
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| 3. Round | 26/02/2004 | Groclin Dyskobolia | - | Girondins Bordeaux | 0:1 | ||||
| 3. Round | 03/03/2004 | Girondins Bordeaux | - | Groclin Dyskobolia | 4:1 | |
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| Round of 16 | 11/03/2004 | Girondins Bordeaux | - | Club Brugge KV | 3:1 | |
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| Round of 16 | 25/03/2004 | Club Brugge KV | - | Girondins Bordeaux | 0:1 | ||||
| Quarter-finals | 08/04/2004 | Girondins Bordeaux | - | Valencia CF | 1:2 | |
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| Quarter-finals | 14/04/2004 | Valencia CF | - | Girondins Bordeaux | 2:1 | |
Spain