| 6. Round | 22/09/2024 | KF Besa Dobërdoll | - | FK Pelister | 2:3 |  |
|||
| 7. Round | 25/09/2024 | FK Pelister | - | FK Rabotnički | 0:0 | ||||
| 8. Round | 29/09/2024 | FK AP Brera Strumica | - | FK Pelister | 4:0 | ||||
| 11. Round | 27/10/2024 | FK Voska Sport | - | FK Pelister | 1:1 | ||||
| 12. Round | 30/10/2024 | KF Gostivari | - | FK Pelister | 0:0 | ||||
| 14. Round | 09/11/2024 | Sileks Kratovo | - | FK Pelister | 1:0 | ||||
| 16. Round | 27/11/2024 | FC Struga | - | FK Pelister | 1:0 |
Serbia