| 1. Round | 01/03/2025 | Pärnu JK Vaprus | - | JK Nõmme Kalju | 0:3 | ||||
| 2. Round | 09/03/2025 | Paide Linnameeskond | - | JK Nõmme Kalju | 4:0 |  |
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| 4. Round | 30/03/2025 | FCI Levadia | - | JK Nõmme Kalju | 2:1 | ||||
| 5. Round | 05/04/2025 | JK Nõmme Kalju | - | FC Flora | 1:2 | ||||
| 6. Round | 09/04/2025 | JK Nõmme Kalju | - | Harju JK | 3:0 | ||||
| 7. Round | 12/04/2025 | FC Kuressaare | - | JK Nõmme Kalju | 0:2 | ||||
| 8. Round | 19/04/2025 | JK Narva Trans | - | JK Nõmme Kalju | 1:2 | ||||
| 10. Round | 27/04/2025 | FC Flora | - | JK Nõmme Kalju | 2:3 | ||||
| 11. Round | 04/05/2025 | JK Nõmme Kalju | - | FCI Levadia | 2:0 | ||||
| 12. Round | 10/05/2025 | JK Tammeka | - | JK Nõmme Kalju | 0:1 | ||||
| 14. Round | 28/05/2025 | JK Nõmme Kalju | - | Paide Linnameeskond | 0:2 | ||||
| 15. Round | 01/06/2025 | JK Tallinna Kalev | - | JK Nõmme Kalju | 0:1 |
Estonia