| 1. Round | 01/03/2025 | FC Flora | - | JK Narva Trans | 2:2 | ||||
| 2. Round | 08/03/2025 | JK Narva Trans | - | FC Kuressaare | 0:2 | ||||
| 3. Round | 15/03/2025 | JK Narva Trans | - | Paide Linnameeskond | 1:0 | ||||
| 4. Round | 29/03/2025 | Harju JK | - | JK Narva Trans | 0:3 | ||||
| 5. Round | 05/04/2025 | JK Narva Trans | - | FCI Levadia | 0:1 | ||||
| 6. Round | 08/04/2025 | JK Narva Trans | - | JK Tallinna Kalev | 1:0 | ||||
| 7. Round | 13/04/2025 | JK Tammeka | - | JK Narva Trans | 1:2 | ||||
| 8. Round | 19/04/2025 | JK Narva Trans | - | JK Nõmme Kalju | 1:2 | ||||
| 9. Round | 23/04/2025 | Pärnu JK Vaprus | - | JK Narva Trans | 1:2 | ||||
| 10. Round | 27/04/2025 | FC Kuressaare | - | JK Narva Trans | 2:1 | ||||
| 11. Round | 03/05/2025 | JK Narva Trans | - | JK Tammeka | 4:0 | ||||
| 12. Round | 11/05/2025 | JK Narva Trans | - | Pärnu JK Vaprus | 4:2 | ||||
| 13. Round | 19/05/2025 | JK Tallinna Kalev | - | JK Narva Trans | 2:5 | ||||
| 15. Round | 31/05/2025 | Paide Linnameeskond | - | JK Narva Trans | 0:1 |
Estonia