| 12. Round | 14/06/2009 | FK Tom Tomsk | - | FK Amkar Perm | 1:2 | ||||
| 13. Round | 11/07/2009 | FK Amkar Perm | - | Dinamo Moskva | 3:1 | ||||
| 15. Round | 24/07/2009 | FK Khimki | - | FK Amkar Perm | 2:0 |  |
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| 16. Round | 02/08/2009 | FK Amkar Perm | - | Krylia Sovetov | 2:0 | ||||
| 17. Round | 09/08/2009 | CSKA Moskva | - | FK Amkar Perm | 1:0 | |
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| 18. Round | 16/08/2009 | FK Amkar Perm | - | Zenit St. Petersburg | 2:4 | ||||
| 19. Round | 23/08/2009 | Kuban Krasnodar (1928-2018) | - | FK Amkar Perm | 1:0 | ||||
| 22. Round | 20/09/2009 | FK Amkar Perm | - | Terek Grozny | 1:0 | ||||
| 24. Round | 04/10/2009 | FK Amkar Perm | - | Spartak Moskva | 1:2 | ||||
| 28. Round | 08/11/2009 | Lokomotiv Moskva | - | FK Amkar Perm | 1:0 | |
Russia