| 1. Round | 06/09/1996 | Panathinaikos | - | PS Kalamata | 3:0 |  |
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| 2. Round | 14/09/1996 | Apollon Smyrnis | - | Panathinaikos | 0:2 | ||||
| 4. Round | 12/10/1996 | Panachaiki GE | - | Panathinaikos | 3:1 | |
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| 5. Round | 19/10/1996 | Panathinaikos | - | AO Edessaikos | 4:1 | |
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| 6. Round | 26/10/1996 | Aris Saloniki | - | Panathinaikos | 0:0 |  |
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| 15. Round | 11/01/1997 | AGS Kastoria | - | Panathinaikos | 1:2 | |
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| 16. Round | 14/01/1997 | OFI Heraklion | - | Panathinaikos | 0:0 | ||||
| 17. Round | 18/01/1997 | Panathinaikos | - | Iraklis Saloniki | 4:0 | |
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| 18. Round | 24/01/1997 | PS Kalamata | - | Panathinaikos | 1:0 | ||||
| 19. Round | 01/02/1997 | Panathinaikos | - | Apollon Smyrnis | 0:2 | ||||
| 21. Round | 15/02/1997 | Panathinaikos | - | Panachaiki GE | 2:0 | ||||
| 22. Round | 22/02/1997 | AO Edessaikos | - | Panathinaikos | 0:1 |
Greece