| 2. Round | 13/08/1988 | TJ Inter Slovnaft ZŤS Petržalka | - | TJ Bohemians ČKD Praha | 1:4 | ||||
| 4. Round | 27/08/1988 | ASVŠ Dukla Banská Bystrica | - | TJ Bohemians ČKD Praha | 3:1 | ||||
| 5. Round | 30/08/1988 | TJ Bohemians ČKD Praha | - | TJ Spartak ZŤS Trnava | 1:0 |  |
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| 6. Round | 10/09/1988 | TJ Baník Ostrava OKD | - | TJ Bohemians ČKD Praha | 1:0 | ||||
| 7. Round | 26/09/1988 | TJ Bohemians ČKD Praha | - | TJ Škoda Plzeň | 3:2 | ||||
| 8. Round | 30/09/1988 | FC DAC 1904 | - | TJ Bohemians ČKD Praha | 3:0 | ||||
| 10. Round | 13/10/1988 | TJ Bohemians ČKD Praha | - | TJ Slovan ChZJD Bratislava | 1:0 | ||||
| 11. Round | 23/10/1988 | ASVS Dukla Praha | - | TJ Bohemians ČKD Praha | 0:0 | ||||
| 12. Round | 30/10/1988 | TJ Bohemians ČKD Praha | - | TJ Plastika Nitra | 0:1 | ||||
| 14. Round | 27/11/1988 | TJ Bohemians ČKD Praha | - | TJ Rudá Hvězda Cheb | 3:2 |
Czech Republic