| 1. Round | 08/01/2012 | Puebla FC | - | Atlas Guadalajara | 0:0 | ||||
| 3. Round | 21/01/2012 | Gallos Blancos (old) | - | Atlas Guadalajara | 2:1 |  |
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| 7. Round | 19/02/2012 | UANL Tigres | - | Atlas Guadalajara | 0:0 | ||||
| 11. Round | 18/03/2012 | Atlas Guadalajara | - | Jaguares Chiapas | 0:3 | ||||
| 12. Round | 25/03/2012 | Club Tijuana | - | Atlas Guadalajara | 2:0 | ||||
| 13. Round | 01/04/2012 | Atlas Guadalajara | - | Pumas UNAM | 0:0 | ||||
| 15. Round | 15/04/2012 | Atlas Guadalajara | - | CF Monterrey | 1:0 | ||||
| 16. Round | 22/04/2012 | Deportivo Guadalajara | - | Atlas Guadalajara | 0:1 | ||||
| 17. Round | 29/04/2012 | Atlas Guadalajara | - | Santos Laguna | 1:3 |
Mexico