| 1. Round | 02/08/2008 | Tescoma Zlín | - | FK Baumit Jablonec | 0:1 | ||||
| 2. Round | 11/08/2008 | FK Baumit Jablonec | - | Baník Ostrava | 2:1 |  |
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| 3. Round | 17/08/2008 | FK Baumit Jablonec | - | FK Mladá Boleslav | 1:1 | ||||
| 4. Round | 24/08/2008 | Sigma Olomouc | - | FK Baumit Jablonec | 1:1 | ||||
| 5. Round | 31/08/2008 | FK Baumit Jablonec | - | SK Kladno | 1:1 | ||||
| 6. Round | 15/09/2008 | Slavia Praha | - | FK Baumit Jablonec | 2:0 | ||||
| 7. Round | 21/09/2008 | FK Baumit Jablonec | - | Viktoria Žižkov | 2:0 | |
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| 9. Round | 05/10/2008 | FK Baumit Jablonec | - | 1. FC Brno | 2:0 | ||||
| 10. Round | 20/10/2008 | Slovan Liberec | - | FK Baumit Jablonec | 3:0 | ||||
| 12. Round | 01/11/2008 | Viktoria Plzeň | - | FK Baumit Jablonec | 1:1 | ||||
| 13. Round | 09/11/2008 | FK Baumit Jablonec | - | Bohemians Praha | 2:1 |  |
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| 14. Round | 16/11/2008 | 1. FK Příbram | - | FK Baumit Jablonec | 2:0 | ||||
| 15. Round | 24/11/2008 | FK Baumit Jablonec | - | AC Sparta Praha | 1:0 |
Slovakia