| 1. Round | 19/03/2006 | Lokomotiv Moskva | - | Krylia Sovetov | 0:1 |  |
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| 2. Round | 27/03/2006 | Krylia Sovetov | - | Rubin Kazan | 0:0 | ||||
| 3. Round | 02/04/2006 | FK Moskva | - | Krylia Sovetov | 1:0 | ||||
| 4. Round | 09/04/2006 | Krylia Sovetov | - | Zenit St. Petersburg | 3:2 | |
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| 6. Round | 23/04/2006 | Krylia Sovetov | - | Dinamo Moskva | 1:0 | |
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| 8. Round | 06/05/2006 | Krylia Sovetov | - | FK Tom Tomsk | 2:1 | ||||
| 9. Round | 14/05/2006 | FK Saturn | - | Krylia Sovetov | 1:1 | ||||
| 12. Round | 23/07/2006 | CSKA Moskva | - | Krylia Sovetov | 1:1 | ||||
| 13. Round | 30/07/2006 | Krylia Sovetov | - | Luch-Energiya Vladivostok | 2:1 |  |
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| 14. Round | 06/08/2006 | Spartak Nalchik | - | Krylia Sovetov | 1:1 | ||||
| 15. Round | 13/08/2006 | Spartak Moskva | - | Krylia Sovetov | 3:2 | ||||
| 16. Round | 19/08/2006 | Krylia Sovetov | - | Lokomotiv Moskva | 1:2 | |
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| 17. Round | 28/08/2006 | Rubin Kazan | - | Krylia Sovetov | 2:1 | |
Ukraine