| 17. Round | 20/07/2024 | FK Krasnodar [U16] | - | FK Strogino Moskva [U16] | 4:2 | ||||
| 18. Round | 27/07/2024 | Akademiya Konopleva [U16] | - | FK Krasnodar [U16] | 0:1 |  |
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| 19. Round | 03/08/2024 | Uor-5 Egorievsk [U16] | - | FK Krasnodar [U16] | 3:0 | ||||
| 30. Round | 02/11/2024 | FK Krasnodar [U16] | - | Chertanovo Football Academy [U16] | 3:3 | ||||
| 31. Round | 10/11/2024 | FK Rostov [U16] | - | FK Krasnodar [U16] | 1:4 | ||||
| 32. Round | 17/11/2024 | FK Krasnodar [U16] | - | FK Almaz-Antey [U16] | 4:1 |
Russia