| 1. Round | 11/07/2016 | Baltika Kaliningrad | - | Shinnik Yaroslavl | 1:0 | ||||
| 2. Round | 16/07/2016 | Baltika Kaliningrad | - | FK Tyumen | 1:0 |  |
|||
| 3. Round | 23/07/2016 | Baltika Kaliningrad | - | Enisey Krasnoyarsk | 0:1 | ||||
| 4. Round | 27/07/2016 | Dinamo Moskva | - | Baltika Kaliningrad | 2:1 | ||||
| 5. Round | 31/07/2016 | Baltika Kaliningrad | - | FK Neftekhimik | 0:0 | ||||
| 6. Round | 06/08/2016 | Baltika Kaliningrad | - | Zenit St. Petersburg 2 | 0:0 | |
|||
| 8. Round | 17/08/2016 | Baltika Kaliningrad | - | Spartak Nalchik | 1:1 | ||||
| 9. Round | 21/08/2016 | Luch-Energiya Vladivostok | - | Baltika Kaliningrad | 1:1 |
Russia