| 1. Round | 09/03/2024 | FK Krasnodar [U16] | - | Akademiya Konopleva [U16] | 2:0 |  |
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| 2. Round | 16/03/2024 | FK Krasnodar [U16] | - | Uor-5 Egorievsk [U16] | 6:0 | ||||
| 4. Round | 07/04/2024 | FK Krasnodar [U16] | - | CSKA Moskva [U16] | 4:0 | ||||
| 6. Round | 20/04/2024 | FK Krasnodar [U16] | - | Zenit St. Petersburg [U16] | 4:1 | ||||
| 9. Round | 11/05/2024 | FK Krasnodar [U16] | - | Dinamo Moskva [U16] | 4:3 | ||||
| 16. Round | 13/07/2024 | Lokomotiv Moskva [U16] | - | FK Krasnodar [U16] | 1:0 | ||||
| 24. Round | 14/09/2024 | FK Krasnodar [U16] | - | FShM Moskva [U16] | 4:0 | ||||
| 25. Round | 21/09/2024 | FK Krasnodar [U16] | - | FK Ural [U16] | 1:0 | |
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| 26. Round | 29/09/2024 | Dinamo Moskva [U16] | - | FK Krasnodar [U16] | 1:0 | ||||
| 27. Round | 05/10/2024 | Rubin Kazan [U16] | - | FK Krasnodar [U16] | 3:4 | ||||
| 28. Round | 19/10/2024 | FK Krasnodar [U16] | - | SShOR Zenit [U16] | 3:0 | ||||
| 31. Round | 10/11/2024 | FK Rostov [U16] | - | FK Krasnodar [U16] | 1:4 | ||||
| 34. Round | 30/11/2024 | FK Krasnodar [U16] | - | Lokomotiv Moskva [U16] | 4:2 |
Russia