| 6. Round | 09/09/2016 | 1. FC Slovácko | - | FC Fastav Zlín | 1:3 | ||||
| 7. Round | 17/09/2016 | FK Mladá Boleslav | - | 1. FC Slovácko | 3:0 | ||||
| 8. Round | 24/09/2016 | 1. FC Slovácko | - | Vysočina Jihlava | 1:1 | ||||
| 11. Round | 22/10/2016 | Slavia Praha | - | 1. FC Slovácko | 1:0 | ||||
| 14. Round | 19/11/2016 | 1. FC Slovácko | - | FC Hradec Králové | 1:3 |  |
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| 16. Round | 04/12/2016 | FK Dukla Praha | - | 1. FC Slovácko | 2:3 |  |
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| 17. Round | 18/02/2017 | 1. FC Slovácko | - | FK Jablonec | 0:0 | |
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| 18. Round | 25/02/2017 | Bohemians Praha 1905 | - | 1. FC Slovácko | 0:0 | ||||
| 19. Round | 04/03/2017 | 1. FC Slovácko | - | Zbrojovka Brno | 0:0 | |
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| 22. Round | 01/04/2017 | Vysočina Jihlava | - | 1. FC Slovácko | 0:0 | ||||
| 27. Round | 06/05/2017 | 1. FC Slovácko | - | MFK Karviná | 1:1 | ||||
| 28. Round | 13/05/2017 | FC Hradec Králové | - | 1. FC Slovácko | 2:1 | ||||
| 29. Round | 20/05/2017 | 1. FC Slovácko | - | Slovan Liberec | 0:1 |
Ghana