| 1. Round | 23/07/2005 | NK Međimurje | - | NK Inter Zaprešić | 1:2 | ||||
| 2. Round | 30/07/2005 | NK Inter Zaprešić | - | NK Pula Staro Cesko | 2:0 | ||||
| 12. Round | 22/10/2005 | NK Inter Zaprešić | - | NK Međimurje | 1:3 |  |
|||
| 13. Round | 26/10/2005 | NK Pula Staro Cesko | - | NK Inter Zaprešić | 3:0 | ||||
| 14. Round | 29/10/2005 | NK Inter Zaprešić | - | HNK Cibalia | 1:0 | ||||
| 16. Round | 19/11/2005 | NK Inter Zaprešić | - | HNK Rijeka | 0:2 | ||||
| 17. Round | 26/11/2005 | NK Inter Zaprešić | - | NK Osijek | 2:3 | ||||
| 18. Round | 03/12/2005 | NK Varteks | - | NK Inter Zaprešić | 2:0 | ||||
| 19. Round | 17/02/2006 | NK Inter Zaprešić | - | Slaven Belupo | 2:1 | ||||
| 20. Round | 25/02/2006 | Hajduk Split | - | NK Inter Zaprešić | 3:2 | ||||
| 21. Round | 04/03/2006 | NK Inter Zaprešić | - | NK Zagreb | 1:0 | |
|||
| 22. Round | 11/03/2006 | Kamen Ingrad | - | NK Inter Zaprešić | 0:1 |
Croatia