| 4. Round | 15/08/2009 | Hajduk Split | - | NK Inter Zaprešić | 2:2 | ||||
| 8. Round | 18/09/2009 | NK Međimurje | - | NK Inter Zaprešić | 2:1 | ||||
| 9. Round | 26/09/2009 | NK Inter Zaprešić | - | NK Croatia Sesvete | 1:2 | ||||
| 10. Round | 03/10/2009 | NK Osijek | - | NK Inter Zaprešić | 4:2 | ||||
| 11. Round | 16/10/2009 | NK Inter Zaprešić | - | NK Zadar | 4:3 |  |
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| 12. Round | 23/10/2009 | Slaven Belupo | - | NK Inter Zaprešić | 5:2 | ||||
| 15. Round | 21/11/2009 | Lokomotiva Zagreb | - | NK Inter Zaprešić | 0:1 | |
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| 16. Round | 28/11/2009 | NK Varteks | - | NK Inter Zaprešić | 2:1 |
Croatia