| 1. Round | 18/01/2004 | Atlas Guadalajara | - | Puebla FC | 1:1 |  |
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| 2. Round | 25/01/2004 | Pumas UNAM | - | Atlas Guadalajara | 3:0 | |
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| 3. Round | 01/02/2004 | Atlas Guadalajara | - | Cruz Azul | 0:2 | ||||
| 4. Round | 07/02/2004 | Veracruz (old) | - | Atlas Guadalajara | 1:1 | ||||
| 5. Round | 15/02/2004 | Atlas Guadalajara | - | UAG Tecos | 3:2 | ||||
| 6. Round | 21/02/2004 | CF Monterrey | - | Atlas Guadalajara | 1:1 | ||||
| 8. Round | 29/02/2004 | Club Irapuato | - | Atlas Guadalajara | 2:1 | ||||
| 17. Round | 01/05/2004 | Deportivo Toluca | - | Atlas Guadalajara | 2:2 | ||||
| 18. Round | 09/05/2004 | Atlas Guadalajara | - | Deportivo Guadalajara | 1:1 |
Mexico