| 1. Round | 06/08/2006 | Atlas Guadalajara | - | Pumas UNAM | 1:0 |  |
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| 2. Round | 13/08/2006 | UAG Tecos | - | Atlas Guadalajara | 1:6 | |
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| 4. Round | 27/08/2006 | Monarcas Morelia | - | Atlas Guadalajara | 1:1 | ||||
| 5. Round | 31/08/2006 | Atlas Guadalajara | - | Club San Luis | 0:1 | ||||
| 8. Round | 14/09/2006 | Atlas Guadalajara | - | Veracruz (old) | 3:1 | ||||
| 14. Round | 22/10/2006 | Atlas Guadalajara | - | CF Monterrey | 2:1 |  |
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| 15. Round | 29/10/2006 | Deportivo Guadalajara | - | Atlas Guadalajara | 3:1 | |
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| 16. Round | 05/11/2006 | Atlas Guadalajara | - | Club Necaxa | 2:1 | ||||
| 17. Round | 11/11/2006 | Gallos Blancos (old) | - | Atlas Guadalajara | 1:1 |
Mexico