| 1. Round | 28/02/2025 | FCI Levadia | - | Harju JK | 5:0 | ||||
| 2. Round | 09/03/2025 | Harju JK | - | JK Tallinna Kalev | 2:0 | ||||
| 3. Round | 16/03/2025 | FC Kuressaare | - | Harju JK | 1:2 |  |
|||
| 4. Round | 29/03/2025 | Harju JK | - | JK Narva Trans | 0:3 |  |
|||
| 5. Round | 05/04/2025 | Pärnu JK Vaprus | - | Harju JK | 1:1 | ||||
| 6. Round | 09/04/2025 | JK Nõmme Kalju | - | Harju JK | 3:0 | ||||
| 7. Round | 12/04/2025 | Harju JK | - | Paide Linnameeskond | 1:2 | ||||
| 8. Round | 18/04/2025 | Harju JK | - | JK Tammeka | 4:1 | |
|
||
| 9. Round | 22/04/2025 | FC Flora | - | Harju JK | 4:1 | ||||
| 10. Round | 26/04/2025 | Harju JK | - | Pärnu JK Vaprus | 0:1 | ||||
| 11. Round | 03/05/2025 | JK Tallinna Kalev | - | Harju JK | 1:3 | |
Ukraine