| 1. Round | 01/03/2025 | Pärnu JK Vaprus | - | JK Nõmme Kalju | 0:3 |  |
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| 3. Round | 16/03/2025 | JK Nõmme Kalju | - | JK Tammeka | 2:2 | ||||
| 4. Round | 30/03/2025 | FCI Levadia | - | JK Nõmme Kalju | 2:1 | ||||
| 5. Round | 05/04/2025 | JK Nõmme Kalju | - | FC Flora | 1:2 | ||||
| 6. Round | 09/04/2025 | JK Nõmme Kalju | - | Harju JK | 3:0 | ||||
| 8. Round | 19/04/2025 | JK Narva Trans | - | JK Nõmme Kalju | 1:2 | ||||
| 9. Round | 22/04/2025 | JK Nõmme Kalju | - | JK Tallinna Kalev | 6:1 | ||||
| 11. Round | 04/05/2025 | JK Nõmme Kalju | - | FCI Levadia | 2:0 | ||||
| 13. Round | 18/05/2025 | JK Nõmme Kalju | - | FC Kuressaare | 4:0 | |
Estonia