| 15. Round | 29/10/2016 | NK Celje | - | NK Krško | 0:3 | ||||
| 17. Round | 19/11/2016 | NK Krško | - | FC Koper | 0:0 | ||||
| 18. Round | 26/11/2016 | NK Maribor | - | NK Krško | 4:0 | ||||
| 19. Round | 30/11/2016 | Rudar Velenje | - | NK Krško | 2:2 | ||||
| 25. Round | 18/03/2017 | NK Radomlje | - | NK Krško | 0:2 | ||||
| 26. Round | 28/03/2017 | FC Koper | - | NK Krško | 0:2 |  |
|||
| 27. Round | 01/04/2017 | NK Krško | - | NK Maribor | 1:1 | ||||
| 29. Round | 17/04/2017 | NK Domžale | - | NK Krško | 5:3 | ||||
| 30. Round | 23/04/2017 | NK Krško | - | Olimpija Ljubljana | 0:1 | ||||
| 31. Round | 29/04/2017 | ND Gorica | - | NK Krško | 0:0 | ||||
| 32. Round | 05/05/2017 | NK Krško | - | NK Aluminij | 1:1 | ||||
| 33. Round | 12/05/2017 | NK Celje | - | NK Krško | 1:2 | ||||
| 34. Round | 16/05/2017 | NK Krško | - | NK Radomlje | 2:0 | ||||
| 35. Round | 21/05/2017 | NK Krško | - | FC Koper | 1:1 | ||||
| 36. Round | 27/05/2017 | NK Maribor | - | NK Krško | 1:0 |
Slovenia