| 7. Round | 05/09/2020 | FK Tom Tomsk | - | Alania Vladikavkaz | 0:1 | ||||
| 8. Round | 09/09/2020 | FK Tom Tomsk | - | Tekstilshchik Ivanovo | 0:2 |  |
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| 9. Round | 13/09/2020 | Krylia Sovetov | - | FK Tom Tomsk | 2:0 | |
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| 10. Round | 19/09/2020 | FK Tom Tomsk | - | Volgar Astrakhan | 1:3 | ||||
| 11. Round | 23/09/2020 | Fakel Voronezh | - | FK Tom Tomsk | 0:0 | ||||
| 13. Round | 04/10/2020 | Torpedo Moskva | - | FK Tom Tomsk | 1:0 | |
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| 14. Round | 09/10/2020 | FK Tom Tomsk | - | Akron Tolyatti | 2:1 | |
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| 18. Round | 28/10/2020 | FK Tom Tomsk | - | SKA-Khabarovsk | 1:2 | ||||
| 19. Round | 01/11/2020 | FK Chayka | - | FK Tom Tomsk | 1:1 | ||||
| 24. Round | 25/11/2020 | Irtysh Omsk | - | FK Tom Tomsk | 1:0 |
Russia