| 3. Round | 10/09/2016 | Omonia Nikosia | - | Doxa Katokopias | 1:1 | ||||
| 4. Round | 17/09/2016 | Ethnikos Achna | - | Omonia Nikosia | 1:2 | ||||
| 5. Round | 24/09/2016 | Omonia Nikosia | - | Karmiotissa Polemidion | 4:2 | ||||
| 6. Round | 02/10/2016 | Apollon Limassol | - | Omonia Nikosia | 2:1 | ||||
| 7. Round | 15/10/2016 | Omonia Nikosia | - | Anorthosis Famagusta | 2:0 | ||||
| 8. Round | 22/10/2016 | Nea Salamina | - | Omonia Nikosia | 1:1 | ||||
| 9. Round | 29/10/2016 | Omonia Nikosia | - | Aris Limassol | 3:1 | ||||
| 10. Round | 05/11/2016 | AE Zakakiou | - | Omonia Nikosia | 0:1 |  |
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| 11. Round | 20/11/2016 | Omonia Nikosia | - | AEK Larnaca | 2:1 | |
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| 12. Round | 26/11/2016 | AEL Limassol | - | Omonia Nikosia | 1:0 | ||||
| 13. Round | 03/12/2016 | Omonia Nikosia | - | APOEL Nikosia | 1:4 | ||||
| 14. Round | 10/12/2016 | Ermis Aradippou | - | Omonia Nikosia | 2:2 | ||||
| 15. Round | 17/12/2016 | Omonia Nikosia | - | Anagennisi Derynias | 5:1 | ||||
| 16. Round | 21/12/2016 | Doxa Katokopias | - | Omonia Nikosia | 2:3 | ||||
| 17. Round | 04/01/2017 | Omonia Nikosia | - | Ethnikos Achna | 3:2 | ||||
| 19. Round | 15/01/2017 | Omonia Nikosia | - | Apollon Limassol | 1:2 |
Greece