| 1. Round | 15/03/2004 | Lokomotiv Moskva | - | Shinnik Yaroslavl | 3:0 | ||||
| 2. Round | 21/03/2004 | FK Rostov | - | Shinnik Yaroslavl | 0:0 | ||||
| 3. Round | 28/03/2004 | Shinnik Yaroslavl | - | Kuban Krasnodar (1928-2018) | 1:0 | ||||
| 4. Round | 03/04/2004 | Shinnik Yaroslavl | - | Alania Vladikavkaz | 1:1 | ||||
| 6. Round | 11/04/2004 | Shinnik Yaroslavl | - | Dinamo Moskva | 1:0 |  |
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| 7. Round | 18/04/2004 | Zenit St. Petersburg | - | Shinnik Yaroslavl | 1:0 | ||||
| 8. Round | 25/04/2004 | Shinnik Yaroslavl | - | Krylia Sovetov | 0:1 | ||||
| 9. Round | 01/05/2004 | FK Amkar Perm | - | Shinnik Yaroslavl | 1:1 | ||||
| 10. Round | 08/05/2004 | Shinnik Yaroslavl | - | Rubin Kazan | 1:1 | |
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| 12. Round | 19/05/2004 | CSKA Moskva | - | Shinnik Yaroslavl | 1:1 |
Russia