| 3. Round | 11/09/2016 | AEK Athen | - | Xanthi FC | 4:1 | ||||
| 4. Round | 17/09/2016 | Veria FC | - | AEK Athen | 0:2 | ||||
| 5. Round | 26/09/2016 | AEK Athen | - | AEP Iraklis FC | 0:0 | ||||
| 6. Round | 02/10/2016 | Olympiakos Piraeus | - | AEK Athen | 3:0 | ||||
| 7. Round | 17/10/2016 | AE Lárissa | - | AEK Athen | 1:2 |  |
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| 8. Round | 22/10/2016 | AEK Athen | - | Panionios GSS | 0:0 | ||||
| 10. Round | 05/11/2016 | AEK Athen | - | Atromitos | 2:2 | ||||
| 22. Round | 26/02/2017 | AEK Athen | - | AE Lárissa | 3:0 |  |
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| 28. Round | 09/04/2017 | AEK Athen | - | AO Kerkyra | 5:0 | ||||
| 30. Round | 30/04/2017 | PAS Giannina | - | AEK Athen | 1:1 |
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