| 3. Round | 03/08/2024 | Rubin Kazan | - | FK Khimki | 2:3 |  |
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| 4. Round | 09/08/2024 | FK Nizhny Novgorod | - | FK Khimki | 1:0 | |
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| 5. Round | 18/08/2024 | FK Khimki | - | Zenit St. Petersburg | 1:1 | |
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| 6. Round | 24/08/2024 | Akhmat Grozny | - | FK Khimki | 3:3 | |
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| 7. Round | 31/08/2024 | FK Khimki | - | CSKA Moskva | 0:2 | ||||
| 8. Round | 15/09/2024 | Akron Tolyatti | - | FK Khimki | 3:0 | |
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| 10. Round | 29/09/2024 | Krylia Sovetov | - | FK Khimki | 0:0 | |
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| 11. Round | 06/10/2024 | FK Krasnodar | - | FK Khimki | 4:0 | |
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| 15. Round | 09/11/2024 | FK Rostov | - | FK Khimki | 3:1 | ||||
| 16. Round | 23/11/2024 | FK Khimki | - | FK Krasnodar | 2:2 | ||||
| 19. Round | 02/03/2025 | FK Khimki | - | Fakel Voronezh | 1:0 | |
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| 20. Round | 08/03/2025 | CSKA Moskva | - | FK Khimki | 1:0 | ||||
| 21. Round | 15/03/2025 | FK Khimki | - | Akhmat Grozny | 1:1 | ||||
| 29. Round | 17/05/2025 | FK Khimki | - | Rubin Kazan | 3:2 | |
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Panama