| 3. Round | 06/08/2016 | FC Academia UTM | - | FC Zimbru | 0:2 |  |
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| 4. Round | 13/08/2016 | Dacia Chişinău | - | FC Academia UTM | 2:0 | ||||
| 7. Round | 11/09/2016 | Speranţa Nisporeni | - | FC Academia UTM | 0:1 | |
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| 8. Round | 17/09/2016 | FC Academia UTM | - | FC Sheriff | 0:1 | ||||
| 9. Round | 25/09/2016 | CS Petrocub | - | FC Academia UTM | 0:1 | ||||
| 10. Round | 30/09/2016 | FC Academia UTM | - | FC Zaria | 0:2 | |
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| 13. Round | 29/10/2016 | FC Academia UTM | - | FC Saxan | 1:0 | |
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| 18. Round | 04/12/2016 | FC Academia UTM | - | Speranţa Nisporeni | 3:1 | ||||
| 19. Round | 10/12/2016 | FC Sheriff | - | FC Academia UTM | 1:0 | ||||
| 20. Round | 24/02/2017 | FC Academia UTM | - | CS Petrocub | 2:1 | |
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| 21. Round | 28/02/2017 | FC Zaria | - | FC Academia UTM | 6:0 | ||||
| 22. Round | 06/03/2017 | FC Academia UTM | - | Dinamo-Auto | 1:2 | ||||
| 23. Round | 12/03/2017 | FC Academia UTM | - | Dinamo-Auto | 1:1 | |
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| 24. Round | 17/03/2017 | FC Saxan | - | FC Academia UTM | 1:0 | ||||
| 25. Round | 31/03/2017 | FC Academia UTM | - | CF Ungheni | 0:1 | |
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| 27. Round | 09/04/2017 | FC Academia UTM | - | FC Zaria | 0:4 |  |
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| 30. Round | 30/04/2017 | FC Zimbru | - | FC Academia UTM | 4:0 | |
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| 32. Round | 12/05/2017 | FC Academia UTM | - | CS Petrocub | 0:0 | |
Moldova