| 1. Round | 05/08/2006 | Jaguares Chiapas | - | Club Necaxa | 1:0 |  |
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| 2. Round | 12/08/2006 | Gallos Blancos (old) | - | Jaguares Chiapas | 1:2 | ||||
| 3. Round | 19/08/2006 | Jaguares Chiapas | - | Pumas UNAM | 0:1 | ||||
| 4. Round | 27/08/2006 | UAG Tecos | - | Jaguares Chiapas | 2:3 | |
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| 5. Round | 31/08/2006 | Jaguares Chiapas | - | CF América | 2:0 | ||||
| 6. Round | 03/09/2006 | Monarcas Morelia | - | Jaguares Chiapas | 2:1 | |
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| 7. Round | 09/09/2006 | Jaguares Chiapas | - | Club San Luis | 1:1 |  |
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| 9. Round | 16/09/2006 | Jaguares Chiapas | - | Atlas Guadalajara | 4:0 | ||||
| 10. Round | 23/09/2006 | Veracruz (old) | - | Jaguares Chiapas | 3:1 | ||||
| 11. Round | 30/09/2006 | Atlante | - | Jaguares Chiapas | 0:1 | ||||
| 12. Round | 07/10/2006 | Jaguares Chiapas | - | Deportivo Toluca | 1:1 | ||||
| 13. Round | 15/10/2006 | Santos Laguna | - | Jaguares Chiapas | 0:0 | ||||
| 14. Round | 22/10/2006 | Jaguares Chiapas | - | CF Pachuca | 0:1 | ||||
| 15. Round | 28/10/2006 | Cruz Azul | - | Jaguares Chiapas | 1:0 | |
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| 16. Round | 04/11/2006 | Jaguares Chiapas | - | CF Monterrey | 1:1 | |
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| 17. Round | 12/11/2006 | Deportivo Guadalajara | - | Jaguares Chiapas | 1:0 |
Mexico