| 6. Round | 22/09/2024 | KF Besa Dobërdoll | - | FK Pelister | 2:3 | ||||
| 7. Round | 25/09/2024 | FK Pelister | - | FK Rabotnički | 0:0 |  |
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| 8. Round | 29/09/2024 | FK AP Brera Strumica | - | FK Pelister | 4:0 | ||||
| 9. Round | 05/10/2024 | FK Pelister | - | GFK Tikvesh | 0:0 | ||||
| 10. Round | 20/10/2024 | FK Pelister | - | KF Shkupi | 0:0 | ||||
| 12. Round | 30/10/2024 | KF Gostivari | - | FK Pelister | 0:0 | ||||
| 14. Round | 09/11/2024 | Sileks Kratovo | - | FK Pelister | 1:0 | ||||
| 15. Round | 24/11/2024 | FK Pelister | - | KF Shkëndija 79 | 0:1 | ||||
| 17. Round | 03/12/2024 | FK Pelister | - | KF Besa Dobërdoll | 1:0 | ||||
| 18. Round | 08/12/2024 | FK Rabotnički | - | FK Pelister | 3:0 | ||||
| 19. Round | 16/02/2025 | FK Pelister | - | FK AP Brera Strumica | 0:0 | ||||
| 20. Round | 23/02/2025 | GFK Tikvesh | - | FK Pelister | 1:2 | |
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| 21. Round | 02/03/2025 | KF Shkupi | - | FK Pelister | 3:1 | ||||
| 22. Round | 05/03/2025 | FK Pelister | - | FK Voska Sport | 1:0 | ||||
| 23. Round | 09/03/2025 | KF Shkëndija 79 | - | FK Pelister | 1:0 | ||||
| 25. Round | 29/03/2025 | FK Pelister | - | Vardar Skopje | 1:3 | ||||
| 27. Round | 13/04/2025 | FK Pelister | - | FK AP Brera Strumica | 1:2 | ||||
| 28. Round | 19/04/2025 | FK Rabotnički | - | FK Pelister | 2:1 |
Brazil