| 1. Round | 09/08/2008 | Leicester City | - | Milton Keynes Dons | 2:0 | ||||
| 2. Round | 16/08/2008 | Milton Keynes Dons | - | Northampton Town | 1:0 | ||||
| 5. Round | 06/09/2008 | Milton Keynes Dons | - | Yeovil Town | 3:0 | ||||
| 9. Round | 04/10/2008 | Millwall FC | - | Milton Keynes Dons | 0:4 | ||||
| 26. Round | 17/01/2009 | Carlisle United | - | Milton Keynes Dons | 3:2 |
Austria