| Group C | 27/10/2016 | Panathinaikos | - | AEP Iraklis FC | 0:0 | ||||
| Group C | 30/11/2016 | OFI Heraklion | - | Panathinaikos | 2:1 | ||||
| Round of 16 | 01/02/2017 | Kissamikos | - | Panathinaikos | 0:4 | ||||
| Quarter-finals | 08/02/2017 | Panathinaikos | - | Asteras Tripolis | 4:0 | ||||
| Semi-finals | 12/04/2017 | Panathinaikos | - | PAOK Saloniki | 2:0 | ||||
| Semi-finals | 27/04/2017 | PAOK Saloniki | - | Panathinaikos | 4:0 |
Greece