| 8. Round | 17/09/2012 | FK Amkar Perm | - | Volga Nizhniy Novgorod | 3:2 | ||||
| 9. Round | 22/09/2012 | Dinamo Moskva | - | FK Amkar Perm | 3:2 |  |
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| 10. Round | 29/09/2012 | FK Amkar Perm | - | Spartak Moskva | 1:3 | |
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| 11. Round | 07/10/2012 | Rubin Kazan | - | FK Amkar Perm | 0:1 | ||||
| 13. Round | 26/10/2012 | Lokomotiv Moskva | - | FK Amkar Perm | 1:2 | ||||
| 16. Round | 18/11/2012 | CSKA Moskva | - | FK Amkar Perm | 3:0 | |
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| 17. Round | 26/11/2012 | FK Amkar Perm | - | Anzhi Makhachkala | 1:2 | ||||
| 18. Round | 03/12/2012 | Mordovia Saransk | - | FK Amkar Perm | 1:1 | ||||
| 19. Round | 08/12/2012 | FK Amkar Perm | - | Krylia Sovetov | 0:2 | ||||
| 28. Round | 11/05/2013 | Kuban Krasnodar (1928-2018) | - | FK Amkar Perm | 4:0 | |
Netherlands