| 1. Round | 31/08/2008 | AEK Athen | - | Panathinaikos | 2:1 | ||||
| 6. Round | 19/10/2008 | AEK Athen | - | AE Lárissa | 1:1 | ||||
| 7. Round | 26/10/2008 | Thrasyvoulos Fylis | - | AEK Athen | 3:3 |  |
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| 8. Round | 02/11/2008 | AEK Athen | - | Asteras Tripolis | 2:1 | ||||
| 9. Round | 08/11/2008 | Skoda Xanthi | - | AEK Athen | 1:1 | ||||
| 10. Round | 15/11/2008 | AEK Athen | - | Panserraikos | 0:0 | |
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| 21. Round | 08/02/2009 | AE Lárissa | - | AEK Athen | 1:1 | ||||
| 23. Round | 22/02/2009 | Asteras Tripolis | - | AEK Athen | 0:1 | ||||
| 25. Round | 08/03/2009 | Panserraikos | - | AEK Athen | 1:5 | |
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| 27. Round | 22/03/2009 | AEK Athen | - | Levadiakos | 3:1 | ||||
| 28. Round | 05/04/2009 | Panthrakikos | - | AEK Athen | 1:1 | ||||
| 29. Round | 12/04/2009 | AEK Athen | - | Aris Saloniki | 0:1 | |
Greece