| 5. Round | 27/09/2003 | Panathinaikos | - | Ionikos Nikea | 2:0 |  |
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| 6. Round | 05/10/2003 | Iraklis Saloniki | - | Panathinaikos | 0:1 |  |
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| 10. Round | 09/11/2003 | Panathinaikos | - | Aris Saloniki | 1:0 | ||||
| 12. Round | 30/11/2003 | Panathinaikos | - | PAOK Saloniki | 3:0 | ||||
| 13. Round | 06/12/2003 | Akratitos Liosion | - | Panathinaikos | 0:0 |  |
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| 14. Round | 14/12/2003 | Panathinaikos | - | AO Proodeftiki | 3:1 | |
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| 15. Round | 21/12/2003 | Panathinaikos | - | Paniliakos Pyrgos | 6:3 | ||||
| 17. Round | 18/01/2004 | Panathinaikos | - | OFI Heraklion | 1:0 |
Croatia