| 6. Round | 04/09/2016 | Aucas | - | Emelec | 1:3 |  |
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| 7. Round | 10/09/2016 | Emelec | - | El Nacional | 2:2 | ||||
| 8. Round | 18/09/2016 | Mushuc Runa | - | Emelec | 3:0 | ||||
| 9. Round | 21/09/2016 | Emelec | - | Club Deportivo River Plate Ecuador | 5:0 | ||||
| 10. Round | 25/09/2016 | Emelec | - | Independiente del Valle | 2:1 | ||||
| 11. Round | 30/09/2016 | Fuerza Amarilla | - | Emelec | 0:2 | |
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| 18. Round | 24/11/2016 | Deportivo Cuenca | - | Emelec | 2:2 |
Ecuador