| 1. Round | 30/08/2003 | VfL Osnabrück [Youth] | - | Werder Bremen [Youth] | 2:5 | ||||
| 3. Round | 14/09/2003 | VfL Wolfsburg [Youth] | - | Werder Bremen [Youth] | 3:1 | ||||
| 4. Round | 21/09/2003 | Werder Bremen [Youth] | - | Tasmania Gropiusstadt [Youth] | 1:1 | ||||
| 6. Round | 12/10/2003 | Werder Bremen [Youth] | - | Hamburger SV [Youth] | 5:0 |  |
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| 8. Round | 09/11/2003 | Werder Bremen [Youth] | - | Hannover 96 [Youth] | 3:2 | ||||
| 9. Round | 15/11/2003 | Hertha BSC [Youth] | - | Werder Bremen [Youth] | 5:1 | ||||
| 11. Round | 30/11/2003 | VfB Leipzig [Youth] | - | Werder Bremen [Youth] | 2:0 | ||||
| 12. Round | 06/12/2003 | Werder Bremen [Youth] | - | FC St. Pauli [Youth] | 5:0 | |
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| 13. Round | 13/12/2003 | Hansa Rostock [Youth] | - | Werder Bremen [Youth] | 1:2 |
Finland