| 4. Round | 02/09/2007 | SpVgg Greuther Fürth | - | FC St. Pauli | 2:1 |  |
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| 7. Round | 25/09/2007 | FC St. Pauli | - | Bor. Mönchengladbach | 0:3 | ||||
| 8. Round | 28/09/2007 | VfL Osnabrück | - | FC St. Pauli | 3:1 | |
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| 9. Round | 07/10/2007 | FC St. Pauli | - | SC Paderborn 07 | 2:1 | ||||
| 10. Round | 21/10/2007 | SC Freiburg | - | FC St. Pauli | 2:0 | ||||
| 12. Round | 02/11/2007 | 1899 Hoffenheim | - | FC St. Pauli | 1:1 | ||||
| 13. Round | 11/11/2007 | FC St. Pauli | - | FC Augsburg | 2:0 |  |
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| 14. Round | 25/11/2007 | Erzgebirge Aue | - | FC St. Pauli | 0:0 | |
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| 15. Round | 30/11/2007 | FC St. Pauli | - | 1. FC Kaiserslautern | 3:4 | |
USA