| 28. Round | 07/07/2006 | Spartak Moskva | - | FK Amkar Perm | 4:1 | ||||
| 10. Round | 12/07/2006 | Krylia Sovetov | - | FK Amkar Perm | 6:1 | ||||
| 11. Round | 16/07/2006 | FK Amkar Perm | - | Luch-Energiya Vladivostok | 0:0 |  |
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| 12. Round | 23/07/2006 | Spartak Nalchik | - | FK Amkar Perm | 2:1 | ||||
| 13. Round | 29/07/2006 | FK Amkar Perm | - | Spartak Moskva | 1:3 | |
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| 14. Round | 06/08/2006 | Lokomotiv Moskva | - | FK Amkar Perm | 0:0 | ||||
| 15. Round | 13/08/2006 | FK Amkar Perm | - | Rubin Kazan | 0:0 | ||||
| 16. Round | 20/08/2006 | FK Amkar Perm | - | FK Moskva | 2:2 | ||||
| 17. Round | 28/08/2006 | Zenit St. Petersburg | - | FK Amkar Perm | 2:0 | ||||
| 18. Round | 09/09/2006 | FK Amkar Perm | - | Torpedo Moskva | 1:0 | ||||
| 19. Round | 17/09/2006 | Dinamo Moskva | - | FK Amkar Perm | 0:0 | |
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| 20. Round | 24/09/2006 | FK Amkar Perm | - | Shinnik Yaroslavl | 1:0 | ||||
| 21. Round | 30/09/2006 | FK Tom Tomsk | - | FK Amkar Perm | 1:3 |  |
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| 22. Round | 14/10/2006 | FK Amkar Perm | - | FK Saturn | 1:0 | ||||
| 23. Round | 21/10/2006 | FK Amkar Perm | - | CSKA Moskva | 0:0 | ||||
| 24. Round | 25/10/2006 | FK Rostov | - | FK Amkar Perm | 1:1 | ||||
| 25. Round | 29/10/2006 | FK Amkar Perm | - | Krylia Sovetov | 1:0 | |
Russia