| 5. Round | 13/04/2024 | FK Chayka [U16] | - | FK Krasnodar [U16] | 0:2 | ||||
| 6. Round | 20/04/2024 | FK Krasnodar [U16] | - | Zenit St. Petersburg [U16] | 4:1 | ||||
| 7. Round | 27/04/2024 | FShM Moskva [U16] | - | FK Krasnodar [U16] | 2:0 | ||||
| 8. Round | 04/05/2024 | FK Ural [U16] | - | FK Krasnodar [U16] | 3:5 | ||||
| 9. Round | 11/05/2024 | FK Krasnodar [U16] | - | Dinamo Moskva [U16] | 4:3 | ||||
| 10. Round | 15/05/2024 | FK Krasnodar [U16] | - | Rubin Kazan [U16] | 4:0 | ||||
| 11. Round | 19/05/2024 | SShOR Zenit [U16] | - | FK Krasnodar [U16] | 1:5 | ||||
| 24. Round | 14/09/2024 | FK Krasnodar [U16] | - | FShM Moskva [U16] | 4:0 | ||||
| 25. Round | 21/09/2024 | FK Krasnodar [U16] | - | FK Ural [U16] | 1:0 | ||||
| 27. Round | 05/10/2024 | Rubin Kazan [U16] | - | FK Krasnodar [U16] | 3:4 |  |
Russia