| 1. Round | 24/07/2016 | FC Academia UTM | - | CF Ungheni | 4:1 | ||||
| 4. Round | 13/08/2016 | Dacia Chişinău | - | FC Academia UTM | 2:0 | ||||
| 11. Round | 15/10/2016 | Dinamo-Auto | - | FC Academia UTM | 3:1 | ||||
| 12. Round | 21/10/2016 | CF Ungheni | - | FC Academia UTM | 1:2 | ||||
| 13. Round | 29/10/2016 | FC Academia UTM | - | FC Saxan | 1:0 | ||||
| 14. Round | 05/11/2016 | FC Zimbru | - | FC Academia UTM | 2:0 |  |
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| 15. Round | 19/11/2016 | FC Academia UTM | - | Dacia Chişinău | 0:1 | ||||
| 20. Round | 24/02/2017 | FC Academia UTM | - | CS Petrocub | 2:1 |  |
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| 21. Round | 28/02/2017 | FC Zaria | - | FC Academia UTM | 6:0 | ||||
| 23. Round | 12/03/2017 | FC Academia UTM | - | Dinamo-Auto | 1:1 | |
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| 25. Round | 31/03/2017 | FC Academia UTM | - | CF Ungheni | 0:1 | ||||
| 26. Round | 05/04/2017 | FC Milsami | - | FC Academia UTM | 3:2 | ||||
| 33. Round | 21/05/2017 | Speranţa Nisporeni | - | FC Academia UTM | 0:0 |
Moldova