| 5. Round | 13/04/2024 | FK Chayka [Youth] | - | FK Krasnodar [Youth] | 0:4 | ||||
| 6. Round | 20/04/2024 | FK Krasnodar [Youth] | - | Zenit St. Petersburg [Youth] | 3:1 | ||||
| 7. Round | 27/04/2024 | FShM Moskva [Youth] | - | FK Krasnodar [Youth] | 0:6 | ||||
| 8. Round | 04/05/2024 | FK Ural [Youth] | - | FK Krasnodar [Youth] | 1:5 | ||||
| 9. Round | 11/05/2024 | FK Krasnodar [Youth] | - | Dinamo Moskva [Youth] | 4:0 | ||||
| 10. Round | 15/05/2024 | FK Krasnodar [Youth] | - | Rubin Kazan [Youth] | 3:1 | ||||
| 11. Round | 19/05/2024 | SShOR Zenit [Youth] | - | FK Krasnodar [Youth] | 2:4 | ||||
| 12. Round | 15/06/2024 | FK Krasnodar [Youth] | - | Spartak Moskva [Youth] | 4:1 | ||||
| 13. Round | 22/06/2024 | Chertanovo Football Academy [Youth] | - | FK Krasnodar [Youth] | 3:4 | ||||
| 14. Round | 29/06/2024 | FK Krasnodar [Youth] | - | FK Rostov [Youth] | 7:1 | ||||
| 15. Round | 06/07/2024 | FK Almaz-Antey [Youth] | - | FK Krasnodar [Youth] | 0:2 | ||||
| 22. Round | 24/08/2024 | FK Krasnodar [Youth] | - | FK Chayka [Youth] | 6:0 | ||||
| 24. Round | 14/09/2024 | FK Krasnodar [Youth] | - | FShM Moskva [Youth] | 3:0 | ||||
| 25. Round | 21/09/2024 | FK Krasnodar [Youth] | - | FK Ural [Youth] | 3:1 |  |
Russia