| 1. Round | 30/07/2006 | Dynamo České Budějovice | - | Slovan Liberec | 0:2 | ||||
| 2. Round | 06/08/2006 | Sigma Olomouc | - | Dynamo České Budějovice | 0:0 |  |
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| 3. Round | 13/08/2006 | Dynamo České Budějovice | - | 1. FC Brno | 0:0 | ||||
| 4. Round | 20/08/2006 | FK SIAD Most | - | Dynamo České Budějovice | 1:2 | ||||
| 5. Round | 27/08/2006 | Dynamo České Budějovice | - | 1. FC Slovácko | 1:0 | ||||
| 8. Round | 24/09/2006 | AC Sparta Praha | - | Dynamo České Budějovice | 3:0 | ||||
| 9. Round | 01/10/2006 | Dynamo České Budějovice | - | Viktoria Plzeň | 2:1 | |
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| 10. Round | 15/10/2006 | FK Mladá Boleslav | - | Dynamo České Budějovice | 4:2 | |
Czech Republic