| 1. Round | 17/07/2016 | Atlas Guadalajara | - | Deportivo Toluca | 1:1 |  |
|||
| 3. Round | 31/07/2016 | Atlas Guadalajara | - | CD Veracruz | 1:0 | ||||
| 4. Round | 07/08/2016 | Monarcas Morelia | - | Atlas Guadalajara | 3:2 | ||||
| 6. Round | 21/08/2016 | Deportivo Guadalajara | - | Atlas Guadalajara | 2:2 | ||||
| 7. Round | 28/08/2016 | Atlas Guadalajara | - | Cruz Azul | 1:1 | ||||
| 9. Round | 18/09/2016 | Atlas Guadalajara | - | Club Necaxa | 0:0 | ||||
| 10. Round | 22/09/2016 | Pumas UNAM | - | Atlas Guadalajara | 2:0 | ||||
| 11. Round | 25/09/2016 | Atlas Guadalajara | - | CF Monterrey | 3:1 | ||||
| 12. Round | 01/10/2016 | Club Tijuana | - | Atlas Guadalajara | 1:0 |  |
|||
| 15. Round | 30/10/2016 | CF Pachuca | - | Atlas Guadalajara | 3:2 | ||||
| 16. Round | 06/11/2016 | Atlas Guadalajara | - | CF América | 1:1 | ||||
| 17. Round | 19/11/2016 | Chiapas FC | - | Atlas Guadalajara | 1:0 |
Mexico