| 19. Round | 02/02/2025 | NK Radomlje | - | FC Koper | 1:2 | ||||
| 22. Round | 22/02/2025 | NK Bravo | - | FC Koper | 2:1 | ||||
| 27. Round | 29/03/2025 | FC Koper | - | NŠ Mura | 1:0 |  |
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| 28. Round | 05/04/2025 | FC Koper | - | NK Radomlje | 3:1 |  |
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| 29. Round | 09/04/2025 | Olimpija Ljubljana | - | FC Koper | 1:1 | ||||
| 31. Round | 19/04/2025 | FC Koper | - | NK Bravo | 1:0 | ||||
| 32. Round | 27/04/2025 | NK Nafta | - | FC Koper | 1:5 | ||||
| 25. Round | 30/04/2025 | FC Koper | - | NK Celje | 1:1 | ||||
| 34. Round | 10/05/2025 | NK Celje | - | FC Koper | 2:3 | ||||
| 35. Round | 18/05/2025 | FC Koper | - | NK Maribor | 1:1 | ||||
| 36. Round | 25/05/2025 | NŠ Mura | - | FC Koper | 1:3 | |
Belgium