| 1. Round | 05/08/2006 | Veracruz (old) | - | Gallos Blancos (old) | 3:0 | ||||
| 2. Round | 12/08/2006 | Gallos Blancos (old) | - | Jaguares Chiapas | 1:2 | ||||
| 3. Round | 20/08/2006 | Deportivo Toluca | - | Gallos Blancos (old) | 3:0 | ||||
| 4. Round | 26/08/2006 | Gallos Blancos (old) | - | Santos Laguna | 2:1 |  |
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| 6. Round | 02/09/2006 | Gallos Blancos (old) | - | Cruz Azul | 2:1 |  |
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| 11. Round | 30/09/2006 | Gallos Blancos (old) | - | Pumas UNAM | 1:1 | ||||
| 12. Round | 07/10/2006 | UAG Tecos | - | Gallos Blancos (old) | 0:2 | ||||
| 13. Round | 14/10/2006 | Gallos Blancos (old) | - | CF América | 1:0 | ||||
| 14. Round | 22/10/2006 | Monarcas Morelia | - | Gallos Blancos (old) | 2:0 |  |
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| 15. Round | 29/10/2006 | Gallos Blancos (old) | - | Club San Luis | 2:2 | ||||
| 16. Round | 05/11/2006 | UANL Tigres | - | Gallos Blancos (old) | 3:2 | ||||
| 17. Round | 11/11/2006 | Gallos Blancos (old) | - | Atlas Guadalajara | 1:1 |
Mexico