| 1. Round | 16/07/2016 | Zlaté Moravce | - | Spartak Myjava | annull. | ||||
| 2. Round | 24/07/2016 | Slovan Bratislava | - | Zlaté Moravce | 3:2 | ||||
| 3. Round | 30/07/2016 | Zlaté Moravce | - | AS Trenčín | 3:0 |  |
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| 4. Round | 06/08/2016 | MFK Zemplín Michalovce | - | Zlaté Moravce | 0:0 | ||||
| 5. Round | 13/08/2016 | Zlaté Moravce | - | FK Senica | 0:1 | ||||
| 6. Round | 20/08/2016 | 1. FC Tatran Prešov | - | Zlaté Moravce | 1:0 | ||||
| 7. Round | 27/08/2016 | FO ŽP Šport Podbrezová | - | Zlaté Moravce | 1:1 | ||||
| 8. Round | 10/09/2016 | Zlaté Moravce | - | FC DAC 1904 | 1:1 | ||||
| 10. Round | 24/09/2016 | Zlaté Moravce | - | MŠK Žilina | 0:2 | ||||
| 11. Round | 01/10/2016 | Spartak Trnava | - | Zlaté Moravce | 1:0 | ||||
| 12. Round | 15/10/2016 | Spartak Myjava | - | Zlaté Moravce | annull. | ||||
| 13. Round | 22/10/2016 | Zlaté Moravce | - | Slovan Bratislava | 1:5 |
Slovakia