| Round of 16 | 25/09/2006 | Deportes Tolima | - | CF Pachuca | 2:1 | ||||
| Round of 16 | 09/10/2006 | CF Pachuca | - | Deportes Tolima | 5:1 |  |
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| Quarter-finals | 17/10/2006 | Lanús | - | CF Pachuca | 0:3 | |
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| Quarter-finals | 30/10/2006 | CF Pachuca | - | Lanús | 2:2 | ||||
| Semi-finals | 14/11/2006 | Athletico Paranaense | - | CF Pachuca | 0:1 | ||||
| Semi-finals | 21/11/2006 | CF Pachuca | - | Athletico Paranaense | 4:1 | |
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| Final | 29/11/2006 | CF Pachuca | - | Colo-Colo | 1:1 | ||||
| Final | 12/12/2006 | Colo-Colo | - | CF Pachuca | 1:2 |
Mexico