| 1. Round | 22/08/2006 | Deportes Tolima | - | Independiente Medellín | 3:1 |  |
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| 1. Round | 28/08/2006 | Independiente Medellín | - | Deportes Tolima | 1:1 | ||||
| 2. Round | 04/09/2006 | Deportes Tolima | - | Mineros de Guayana | 0:0 |  |
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| 2. Round | 20/09/2006 | Mineros de Guayana | - | Deportes Tolima | 2:2 | ||||
| Round of 16 | 25/09/2006 | Deportes Tolima | - | CF Pachuca | 2:1 | ||||
| Round of 16 | 09/10/2006 | CF Pachuca | - | Deportes Tolima | 5:1 |
Colombia