| 1. Round | 20/07/2013 | Club Tijuana | - | Atlas Guadalajara | 3:3 | ||||
| 2. Round | 28/07/2013 | Atlas Guadalajara | - | Club León | 1:2 | ||||
| 3. Round | 31/07/2013 | Atlante | - | Atlas Guadalajara | 1:1 | ||||
| 4. Round | 03/08/2013 | CF América | - | Atlas Guadalajara | 3:0 | ||||
| 9. Round | 08/09/2013 | Atlas Guadalajara | - | Santos Laguna | 2:2 | ||||
| 10. Round | 15/09/2013 | Chiapas FC | - | Atlas Guadalajara | 3:0 | ||||
| 12. Round | 29/09/2013 | Deportivo Guadalajara | - | Atlas Guadalajara | 1:1 |  |
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| 15. Round | 27/10/2013 | Atlas Guadalajara | - | Gallos Blancos | 3:1 | ||||
| 17. Round | 10/11/2013 | Atlas Guadalajara | - | UANL Tigres | 0:1 |
Mexico