| 5. Round | 13/08/2016 | MFK Ružomberok | - | Slovan Bratislava | 3:2 | ||||
| 6. Round | 20/08/2016 | Slovan Bratislava | - | MŠK Žilina | 1:0 | ||||
| 7. Round | 27/08/2016 | Spartak Trnava | - | Slovan Bratislava | 0:0 | ||||
| 11. Round | 01/10/2016 | Slovan Bratislava | - | MFK Zemplín Michalovce | 3:1 |  |
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| 12. Round | 16/10/2016 | Slovan Bratislava | - | FK Senica | 2:0 | ||||
| 13. Round | 22/10/2016 | Zlaté Moravce | - | Slovan Bratislava | 1:5 | ||||
| 14. Round | 30/10/2016 | Slovan Bratislava | - | FO ŽP Šport Podbrezová | 2:0 | ||||
| 15. Round | 06/11/2016 | Slovan Bratislava | - | FC DAC 1904 | 1:0 | |
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| 16. Round | 20/11/2016 | Slovan Bratislava | - | MFK Ružomberok | 2:1 | ||||
| 17. Round | 26/11/2016 | MŠK Žilina | - | Slovan Bratislava | 2:1 | ||||
| 18. Round | 04/12/2016 | Slovan Bratislava | - | Spartak Trnava | 0:1 | ||||
| 19. Round | 10/12/2016 | Spartak Myjava | - | Slovan Bratislava | annull. |
Slovakia